PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022399
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 703aa    MW: 76298.8 Da    PI: 6.3259
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022399genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07281301526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  DCAR_022399 281 PCPDFRK-GACRRGDMCEYAHG 301
                  8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002049.22E-169135No hitNo description
Gene3DG3DSA:1.25.40.201.5E-179136IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.07E-1710132IPR020683Ankyrin repeat-containing domain
SMARTSM0024815001040IPR002110Ankyrin repeat
PfamPF127965.9E-1318126IPR020683Ankyrin repeat-containing domain
SMARTSM002484.5E-45787IPR002110Ankyrin repeat
PROSITE profilePS5029715.61857127IPR020683Ankyrin repeat-containing domain
PRINTSPR014152.1E-55873IPR002110Ankyrin repeat
PROSITE profilePS5008811.78192127IPR002110Ankyrin repeat
SMARTSM002482.5E-492124IPR002110Ankyrin repeat
PRINTSPR014152.1E-5111125IPR002110Ankyrin repeat
SMARTSM003564.0E-6276302IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5281301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4281303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582281303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4309339IPR000571Zinc finger, CCCH-type
SMARTSM0035639311334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MGPLFVDTED NFSSLLEFAA NNDCEAFKAL IKENSLAVDE IGLWYVRKKG SKQIVLEHRT  60
PLMVAATYGS LDVVKFIISQ PAVDVNIACG LDKCTALHCA ASGGAVNAVD IVKLLLAVGA  120
DPNIKDANDQ RAVDVIVVPP KLLDVKASLE ELLLSNVFDG SMGDCKLRVS LSPPSYSPSL  180
SSSPDNGSPY SPSDLVSSPM LSKSTDVPGG AISEKKEYPI DPSLPDIKNS IYSTDEFRMF  240
SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPDFRKGAC RRGDMCEYAH  300
GVFECWLHPA QYRTRLCKDG TSCDRRVCFF AHTPDELRPL YVSTGSAVPS PRSSASAASV  360
MDMAVAMNLL PGSPSASMMS PSGFNQPMSP SGNGAHSSLA WPQPNVPTLH LPGSNMQSSR  420
LRSSLSARDV PPEHLHLLQD MDAHQLLLND LACLSQSRPS PVSLNRSGRP KTLTPSNLED  480
LFSAELASSP RYSDQAASAG GFSPSHRSAV FNQFQQQQNM LSPINTNVFS PKSADHPLLQ  540
ASYGVSSPGR MSPRSVDPIS PMGSRHTAFS QREFQQPQQM RSLSSRDLGS NNVSIVGSPV  600
NSWSKWSSPS GKVDWSVNGD EHSWLPRSSS NDLNNNTEEP DISWVQSLVK ESPLEMKDNL  660
PAPFVSAGPS GEGFKSNSQV ESVDHSVLGA WIEQMQLDQL PV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799603.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A068UH580.0A0A068UH58_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000175450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain